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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
595
ChIP-seq
181
ATAC-seq
174
DNase-seq
4
FAIRE-seq
Assay category
595
DNA binding
359
DNA accessibility
Target of assay
520
histone modification
519
histone
266
narrow histone mark
253
broad histone mark
75
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
160
June, 2019
151
October, 2019
93
May, 2019
66
August, 2017
65
April, 2019
64
August, 2021
58
November, 2017
45
October, 2018
40
May, 2024
38
May, 2022
36
December, 2017
36
February, 2023
27
May, 2020
20
November, 2019
17
November, 2018
12
October, 2017
8
February, 2021
7
July, 2019
6
January, 2019
3
December, 2018
2
March, 2020
Available data
1788
bam
1653
bigWig
955
tsv
954
bed narrowPeak
558
bigBed narrowPeak
372
fastq
238
tagAlign
210
bed broadPeak
202
bed bed3+
173
bigBed broadPeak
157
txt
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
948
Homo sapiens
Biosample type
954
tissue
404
cell line
292
primary cell
132
in vitro differentiated cells
2
stem cell
Organ
192
brain
173
heart
153
kidney
123
pancreas
113
liver
100
blood vessel
100
vasculature
92
limb
62
artery
51
musculature of body
eye
27
nerve
18
ureter
14
spleen
13
adipose tissue
13
connective tissue
12
epithelium
8
bone element
8
skeleton
1
pituitary gland
Project
952
AMP
2
T1D
Genome assembly (visualization)
880
GRCh38
747
hg19
Lab
812
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
RRBS
month_released!
July, 2018
organ_slims!
eye
BIOSAMPLE
ASSAY
954 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
82
20
2
kidney
20
64
13
1
islet of Langerhans
20
37
1
1
coronary artery
3
36
2
left cardiac atrium
40
1
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