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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
760
ChIP-seq
569
total RNA-seq
216
ATAC-seq
174
single cell RNA-seq
171
DNase-seq
86
RNA microarray
28
snATAC-seq
23
pCHi-C
19
WGBS
15
Hi-C
14
small RNA-seq
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
760
DNA binding
757
Transcription
419
DNA accessibility
19
DNA methylation
15
3D chromatin structure
Target of assay
541
histone modification
540
histone
293
narrow histone mark
247
broad histone mark
147
control
74
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
222
August, 2017
222
August, 2021
214
October, 2019
193
May, 2020
159
June, 2019
120
July, 2018
101
February, 2021
82
November, 2017
80
April, 2019
66
May, 2022
65
May, 2019
59
February, 2023
54
July, 2019
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
November, 2019
36
March, 2020
25
November, 2018
22
October, 2017
20
February, 2020
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1322
bam
1221
bigWig
871
bed narrowPeak
605
tsv
489
bigBed narrowPeak
331
fastq
230
tagAlign
205
bed broadPeak
194
bed bed3+
169
bigBed broadPeak
157
txt
64
xls
13
bed bedMethyl
13
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2078
Homo sapiens
Biosample type
2086
tissue
997
primary cell
596
cell line
297
in vitro differentiated cells
9
stem cell
Organ
connective tissue
503
pancreas
488
adipose tissue
360
liver
312
heart
298
kidney
264
brain
158
bone element
133
blood vessel
vasculature
122
limb
78
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1989
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1274
GRCh38
1194
hg19
Lab
1734
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
RRBS
month_released!
August, 2020
organ_slims!
connective tissue
vasculature
BIOSAMPLE
ASSAY
2086 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
70
292
68
6
1
7
4
3
1
4
liver
145
167
20
1
2
1
3
1
1
kidney
27
49
75
64
13
6
1
1
bone element
84
heart left ventricle
35
3
2
18
3
1
4
1
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