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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
998
total RNA-seq
833
ChIP-seq
184
ATAC-seq
173
DNase-seq
173
single cell RNA-seq
87
RNA microarray
27
snATAC-seq
25
WGBS
24
pCHi-C
16
small RNA-seq
15
Hi-C
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1187
Transcription
833
DNA binding
388
DNA accessibility
25
DNA methylation
15
3D chromatin structure
Target of assay
573
histone modification
572
histone
305
narrow histone mark
267
broad histone mark
171
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
279
August, 2017
223
August, 2021
215
October, 2019
193
May, 2020
160
June, 2019
120
July, 2018
82
November, 2017
80
April, 2019
74
October, 2018
May, 2022
65
May, 2019
64
July, 2019
60
February, 2023
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
37
March, 2020
26
November, 2018
23
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1796
bam
1682
bigWig
1062
tsv
846
bed narrowPeak
499
bigBed narrowPeak
350
fastq
238
tagAlign
208
bed broadPeak
199
bed bed3+
171
bigBed broadPeak
150
txt
64
xls
15
bed bedMethyl
15
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2557
Homo sapiens
Biosample type
2566
tissue
913
primary cell
596
cell line
394
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
488
adipose tissue
479
pancreas
320
liver
312
heart
298
kidney
264
brain
158
bone element
blood vessel
133
vasculature
122
limb
76
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2469
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1754
GRCh38
1637
hg19
Lab
2278
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
RRBS
month_released!
May, 2022
organ_slims!
blood vessel
lymph node
BIOSAMPLE
ASSAY
2566 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
286
70
50
1
6
7
4
3
1
4
adipose tissue
382
2
3
3
1
liver
147
145
2
1
3
1
1
1
kidney
49
27
75
13
64
6
1
1
bone element
84
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