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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
41
ChIP-seq
35
ATAC-seq
3
Hi-C
3
pCHi-C
3
total RNA-seq
RRBS
2
WGBS
Assay category
96
Transcription
41
DNA binding
35
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
36
histone
36
histone modification
20
broad histone mark
16
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
40
May, 2024
36
February, 2023
5
March, 2020
3
February, 2020
2
July, 2019
1
April, 2019
1
October, 2019
Available data
224
bigWig
bam
191
bed narrowPeak
168
tsv
94
bigBed narrowPeak
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
180
Homo sapiens
Biosample type
180
tissue
Organ
254
pancreas
206
kidney
199
epithelium
180
heart
106
liver
93
bone element
83
connective tissue
53
eye
49
adipose tissue
48
blood vessel
48
vasculature
39
artery
38
brain
33
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
180
AMP
Genome assembly (visualization)
75
GRCh38
4
hg19
Lab
140
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
assay_title!
RRBS
files.file_type!
bam
bed bed3+
organ_slims!
vein
BIOSAMPLE
ASSAY
180 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
total RNA-seq
WGBS
tissue
left cardiac atrium
18
40
coronary artery
35
1
heart left ventricle
18
1
1
1
2
heart right ventricle
17
1
1
right cardiac atrium
18
1
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