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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
total RNA-seq
9
ChIP-seq
1
GRO-seq
RRBS
Assay category
15
Transcription
9
DNA binding
Target of assay
6
histone
6
histone modification
3
broad histone mark
3
control
3
narrow histone mark
Date released
December, 2017
13
February, 2018
8
August, 2021
2
May, 2021
1
January, 2018
1
July, 2019
Available data
24
bam
22
bigWig
15
tsv
14
fastq
6
bed narrowPeak
Organism
25
Homo sapiens
Biosample type
16
in vitro differentiated cells
8
cell line
1
primary cell
Organ
944
pancreas
725
liver
677
connective tissue
499
epithelium
491
adipose tissue
391
heart
350
kidney
283
brain
235
vasculature
230
blood vessel
155
bone element
141
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
25
spleen
24
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
25
AMP
Genome assembly (visualization)
21
GRCh38
21
hg19
1
hg18
Lab
25
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
RRBS
files.file_type!
bed bed3
month_released!
December, 2017
BIOSAMPLE
ASSAY
25 results
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Clear Filters
total RNA-seq
ChIP-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
4
9
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
primary cell
pericardium fibroblast
1
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