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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
60
ChIP-seq
9
ATAC-seq
8
snATAC-seq
1
pCHi-C
Assay category
62
Transcription
60
DNA binding
17
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
150
February, 2021
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
4
February, 2023
1
January, 2018
1
May, 2021
Available data
126
bam
113
bigWig
88
txt
62
bed narrowPeak
60
fastq
58
tsv
54
bigBed narrowPeak
bed bed3
Organism
224
Homo sapiens
Biosample type
154
tissue
61
cell line
9
primary cell
Organ
926
pancreas
781
liver
673
connective tissue
490
adipose tissue
483
epithelium
383
heart
320
kidney
197
brain
188
vasculature
183
blood vessel
155
bone element
115
artery
91
musculature of body
69
blood
69
bodily fluid
53
limb
39
eye
37
embryo
25
spleen
20
lung
18
ureter
12
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
215
AMP
9
T1D
Genome assembly (visualization)
121
hg19
120
GRCh38
Lab
215
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
inconsistent control
assay_title!
RRBS
files.file_type!
bed bed3
month_released!
October, 2019
BIOSAMPLE
ASSAY
224 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
distal epiphysis
1
distal epiphysis of femur
1
+ See 9 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
megakaryocyte
1
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