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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
18
DNase-seq
14
total RNA-seq
1
ATAC-seq
1
GRO-seq
Assay category
22
DNA binding
19
DNA accessibility
14
Transcription
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
18
June, 2019
13
December, 2017
13
February, 2018
8
August, 2021
2
May, 2021
1
January, 2018
1
October, 2019
Available data
54
bam
47
bigWig
32
bed narrowPeak
27
fastq
21
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
18
bigBed narrowPeak
14
tsv
Organism
56
Homo sapiens
Biosample type
29
in vitro differentiated cells
19
tissue
8
cell line
Organ
944
pancreas
788
liver
677
connective tissue
518
epithelium
491
adipose tissue
391
heart
350
kidney
283
brain
235
vasculature
230
blood vessel
155
bone element
141
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
56
AMP
Genome assembly (visualization)
47
GRCh38
47
hg19
1
hg18
Lab
56
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
RRBS
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
56 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
tissue
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
islet of Langerhans
1
cell line
H1-hESC
8
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