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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
4
WGBS
3
total RNA-seq
2
ATAC-seq
2
pCHi-C
1
RNA microarray
Assay category
47
DNA binding
4
DNA methylation
3
Transcription
2
DNA accessibility
Target of assay
24
histone
24
histone modification
23
control
16
broad histone mark
8
narrow histone mark
Date released
33
August, 2017
18
October, 2018
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
March, 2020
1
May, 2023
1
November, 2019
Available data
442
bam
bigWig
401
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
58
Homo sapiens
Biosample type
58
tissue
1
in vitro differentiated cells
Organ
316
pancreas
219
kidney
215
epithelium
165
heart
123
liver
bone element
92
connective tissue
78
blood vessel
78
vasculature
59
adipose tissue
54
artery
54
eye
31
limb
26
brain
21
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
59
AMP
Genome assembly (visualization)
3
hg19
2
GRCh38
Lab
59
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
RRBS
files.file_type!
bigWig
tagAlign
organ_slims!
bone element
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
WGBS
total RNA-seq
ATAC-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
28
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
1
1
1
1
adipose tissue(adipose white tissue)
1
in vitro differentiated cells
white fat cell
1
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