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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
31
ChIP-seq
16
ATAC-seq
4
total RNA-seq
3
Hi-C
RRBS
1
FAIRE-seq
Assay category
49
DNA accessibility
31
DNA binding
4
Transcription
3
3D chromatin structure
Target of assay
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
18
November, 2017
9
February, 2023
8
February, 2021
8
October, 2019
5
July, 2019
4
October, 2017
3
May, 2019
2
November, 2018
Available data
85
bam
56
bigWig
44
bed narrowPeak
36
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
tsv
19
tagAlign
11
fastq
5
bed bed3
4
txt
3
hdf5
Organism
87
Homo sapiens
Biosample type
73
tissue
14
primary cell
Organ
513
liver
376
pancreas
296
kidney
269
epithelium
127
connective tissue
126
heart
101
bone element
96
vasculature
92
blood vessel
71
brain
68
blood
68
bodily fluid
66
limb
63
artery
58
adipose tissue
52
eye
49
musculature of body
19
lung
18
spleen
18
ureter
16
skeleton
14
nerve
11
embryo
7
vein
1
bone marrow
1
pituitary gland
1
skin of body
1
thymus
Project
87
AMP
Genome assembly (visualization)
45
GRCh38
45
hg19
Lab
87
AMP-T2D consortium
assay_title!
RRBS
files.file_type!
tsv
target.investigated_as!
histone
BIOSAMPLE
ASSAY
87 results
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DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
FAIRE-seq
tissue
brain
14
3
1
cerebellum (Hemisphere)
1
2
1
caudate nucleus
1
2
frontal cortex
2
1
layer of hippocampus
3
+ See 33 more…
primary cell
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
brain pericyte
1
1
astrocyte of the hippocampus
1
See all biosamples
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