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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
37
DNase-seq
9
ATAC-seq
6
Hi-C
RRBS
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
98
DNA binding
47
DNA accessibility
6
3D chromatin structure
1
DNA methylation
1
Transcription
Target of assay
76
histone
76
histone modification
50
broad histone mark
26
narrow histone mark
22
control
Date released
65
October, 2019
43
June, 2019
22
August, 2017
7
May, 2019
6
February, 2021
5
July, 2019
2
March, 2020
2
May, 2022
1
January, 2018
Available data
131
bam
120
bigWig
114
bed narrowPeak
93
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
tsv
15
tagAlign
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
Organism
153
Homo sapiens
Biosample type
142
tissue
11
primary cell
Organ
615
liver
527
pancreas
362
epithelium
326
kidney
258
brain
223
heart
205
connective tissue
167
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
83
artery
82
musculature of body
69
blood
69
bodily fluid
55
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
thymus
0
small intestine
Project
153
AMP
Genome assembly (visualization)
118
hg19
101
GRCh38
Lab
153
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
RRBS
files.file_type!
tsv
BIOSAMPLE
ASSAY
153 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
single cell RNA-seq
snATAC-seq
tissue
tibial nerve
35
2
1
tibial artery
23
2
1
skeletal muscle tissue
22
1
1
1
muscle of leg
7
13
1
muscle of arm
17
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primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
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