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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
DNase-seq
7
ChIP-seq
7
Hi-C
Assay category
16
DNA accessibility
7
3D chromatin structure
7
DNA binding
Target of assay
4
histone
4
histone modification
3
narrow histone mark
2
control
1
broad histone mark
1
transcription factor
Date released
14
June, 2019
4
August, 2021
3
May, 2021
3
October, 2022
2
July, 2019
2
October, 2019
1
March, 2020
1
November, 2019
Available data
317
bam
301
bigWig
257
fastq
156
tsv
151
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
30
Homo sapiens
Biosample type
26
primary cell
3
in vitro differentiated cells
1
cell line
Organ
153
brain
98
liver
78
kidney
55
pancreas
51
musculature of body
50
connective tissue
39
heart
36
limb
30
epithelium
21
vasculature
19
blood vessel
18
ureter
15
adipose tissue
10
artery
4
eye
3
embryo
3
vein
2
nerve
1
pituitary gland
1
spleen
Project
27
AMP
3
HPAP
Genome assembly (visualization)
22
hg19
21
GRCh38
Lab
27
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
2
inconsistent ontology term
assay_title!
RRBS
BIOSAMPLE
ASSAY
30 results
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DNase-seq
ChIP-seq
Hi-C
primary cell
hepatocyte
1
4
endothelial cell of umbilical vein
2
1
brain microvascular endothelial cell
1
1
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 12 more…
in vitro differentiated cells
pancreatic PP cell
3
cell line
EndoC_BH1
1
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