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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
RRBS
16
WGBS
13
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
72
Transcription
16
DNA methylation
4
DNA accessibility
Date released
89
February, 2021
57
August, 2021
7
February, 2023
7
July, 2019
7
May, 2022
7
November, 2018
2
August, 2017
1
October, 2022
Available data
3278
bam
3078
bigWig
1725
bed narrowPeak
1593
tsv
1354
fastq
958
bigBed narrowPeak
398
tagAlign
286
bed broadPeak
249
bigBed broadPeak
237
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
23
bedpe bed3+
23
hic
16
bed bedMethyl
16
bigBed bedMethyl
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
176
Homo sapiens
Biosample type
172
tissue
3
in vitro differentiated cells
2
cell line
Organ
88
bone element
62
kidney
10
pancreas
6
heart
4
skeleton
2
adipose tissue
2
connective tissue
2
musculature of body
2
spleen
1
blood vessel
limb
1
liver
1
vasculature
Project
177
AMP
Genome assembly (visualization)
16
GRCh38
4
hg19
Lab
111
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
assay_title!
RRBS
files.file_type!
bed bed3
organ_slims!
limb
BIOSAMPLE
ASSAY
177 results
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RNA microarray
total RNA-seq
WGBS
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
adipose tissue
2
body of pancreas
2
+ See 12 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
HepG2
1
MIN6
1
See all biosamples
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