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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
ChIP-seq
1
FAIRE-seq
1
Hi-C
Assay category
3
DNA binding
1
3D chromatin structure
1
DNA accessibility
Target of assay
3
transcription factor
1
RNA binding protein
Date released
3
November, 2017
1
March, 2019
1
October, 2019
Available data
3174
bam
2959
bigWig
1607
bed narrowPeak
1600
tsv
1354
fastq
832
bigBed narrowPeak
398
tagAlign
161
txt
153
zippedFastqFolder
135
bed broadPeak
98
bigBed broadPeak
86
bed bed3+
64
xls
23
bedpe bed3+
23
hic
17
bed bedMethyl
17
bigBed bedMethyl
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
5
Homo sapiens
Biosample type
3
cell line
1
primary cell
1
tissue
Organ
3
liver
1
blood vessel
1
epithelium
1
pancreas
1
vasculature
1
vein
Project
5
AMP
Genome assembly (visualization)
5
hg19
Lab
4
AMP-T2D consortium
1
Bing Ren, UCSD
assay_title!
RRBS
month_released!
June, 2019
BIOSAMPLE
ASSAY
5 results
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ChIP-seq
FAIRE-seq
Hi-C
cell line
HepG2
3
primary cell
endothelial cell of umbilical vein
1
tissue
islet of Langerhans
1
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