Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
10
total RNA-seq
5
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
15
Transcription
4
DNA accessibility
Date released
89
February, 2021
7
February, 2023
7
May, 2022
1
October, 2022
Available data
2907
bam
2673
bigWig
1600
tsv
1284
bed narrowPeak
900
fastq
637
bigBed narrowPeak
389
tagAlign
273
bed broadPeak
254
bed bed3+
236
bigBed broadPeak
153
zippedFastqFolder
104
txt
23
bedpe bed3+
22
hic
17
bed bedMethyl
17
bigBed bedMethyl
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
1
vcf
Organism
103
Homo sapiens
Biosample type
100
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
6
pancreas
5
kidney
4
skeleton
1
musculature of body
Project
104
AMP
Genome assembly (visualization)
4
hg19
Lab
95
AMP-T2D consortium
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
assay_title!
RRBS
lab.title!
Katalin Susztak, Upenn
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
104 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
islet of Langerhans
6
kidney
5
acetabular part of hip bone
1
ilium
1
+ See 3 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
See all biosamples
Download