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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
32
DNase-seq
16
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
134
DNA binding
36
DNA accessibility
23
Transcription
3
3D chromatin structure
Target of assay
110
histone
110
histone modification
67
broad histone mark
43
narrow histone mark
24
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
October, 2019
30
June, 2019
28
May, 2019
16
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
160
bam
146
bigWig
128
bed narrowPeak
127
bigBed narrowPeak
80
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
25
tsv
21
fastq
3
hdf5
1
bed bed3
Organism
198
Homo sapiens
Biosample type
178
tissue
20
primary cell
Organ
pancreas
782
liver
679
connective tissue
490
adipose tissue
483
epithelium
383
heart
320
kidney
198
brain
188
vasculature
183
blood vessel
159
bone element
115
artery
91
musculature of body
69
blood
69
bodily fluid
53
limb
39
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
198
AMP
Genome assembly (visualization)
139
GRCh38
84
hg19
Lab
198
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
RRBS
lab.title!
ITG
month_released!
October, 2019
organ_slims!
pancreas
BIOSAMPLE
ASSAY
198 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
pCHi-C
FAIRE-seq
tissue
brain
15
14
1
layer of hippocampus
22
caudate nucleus
15
1
1
temporal lobe
15
1
1
substantia nigra
15
1
+ See 23 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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