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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
32
ChIP-seq
6
Hi-C
RRBS
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
32
DNA binding
7
Transcription
6
3D chromatin structure
1
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
5
control
Date released
43
June, 2019
22
August, 2017
9
July, 2019
May, 2019
5
March, 2020
February, 2020
2
May, 2022
1
January, 2018
Available data
62
bigWig
54
bed narrowPeak
50
bam
46
bed broadPeak
41
bigBed narrowPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
7
tsv
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
Organism
82
Homo sapiens
Biosample type
69
tissue
13
primary cell
Organ
941
pancreas
748
liver
681
connective tissue
513
epithelium
489
adipose tissue
367
heart
345
kidney
244
brain
182
vasculature
177
blood vessel
159
bone element
134
artery
112
limb
82
musculature of body
69
blood
69
bodily fluid
59
eye
42
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
82
AMP
Genome assembly (visualization)
64
hg19
48
GRCh38
Lab
82
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
RRBS
lab.title!
Karen Mohlke, UNC
month_released!
February, 2020
May, 2019
BIOSAMPLE
ASSAY
82 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
1
1
1
muscle of arm
17
muscle of leg
13
1
psoas muscle
2
2
1
gastrocnemius medialis
4
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
1
2
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