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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
4
ChIP-seq
4
DNase-seq
4
pCHi-C
RRBS
Assay category
32
DNA accessibility
19
Transcription
4
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
control
1
transcription factor
Date released
31
February, 2023
21
October, 2019
6
June, 2019
1
February, 2020
Available data
33
bed narrowPeak
6
bam
6
bigBed narrowPeak
6
bigWig
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
59
Homo sapiens
Biosample type
56
tissue
3
primary cell
Organ
890
pancreas
681
liver
648
connective tissue
488
epithelium
467
adipose tissue
371
heart
338
kidney
253
brain
213
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
85
musculature of body
63
blood
bodily fluid
59
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
59
AMP
Genome assembly (visualization)
33
hg19
6
GRCh38
Lab
59
AMP-T2D consortium
assay_title!
RRBS
lab.title!
Stephen Parker, UMich
organ_slims!
bodily fluid
target.investigated_as!
control
BIOSAMPLE
ASSAY
59 results
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ATAC-seq
total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
tissue
islet of Langerhans
1
14
2
4
retina
15
3
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
2
1
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