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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
ChIP-seq
32
DNase-seq
17
total RNA-seq
12
single cell RNA-seq
10
snATAC-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
pCHi-C
RRBS
1
FAIRE-seq
Assay category
203
DNA binding
46
DNA accessibility
33
Transcription
3
3D chromatin structure
Target of assay
175
histone
175
histone modification
115
narrow histone mark
60
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
19
April, 2020
16
July, 2019
October, 2017
12
February, 2020
3
March, 2020
2
November, 2018
1
February, 2023
Available data
234
bam
215
bigWig
197
bed narrowPeak
121
bigBed narrowPeak
104
tagAlign
44
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
27
tsv
11
fastq
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
287
Homo sapiens
Biosample type
268
tissue
20
primary cell
Organ
939
pancreas
766
liver
680
connective tissue
517
epithelium
490
adipose tissue
391
heart
350
kidney
268
brain
235
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
91
musculature of body
60
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
24
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
269
AMP
19
LungMap
Genome assembly (visualization)
210
GRCh38
156
hg19
Lab
269
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
3
inconsistent ontology term
assay_title!
RRBS
month_released!
October, 2017
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
288 results
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ChIP-seq
DNase-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
small RNA-seq
ATAC-seq
Hi-C
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
23
brain
5
14
1
1
lung
9
10
1
caudate nucleus
15
1
1
substantia nigra
16
1
+ See 78 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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