Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
200
DNA binding
36
DNA accessibility
24
Transcription
3
3D chromatin structure
Target of assay
175
histone
175
histone modification
115
narrow histone mark
60
broad histone mark
28
control
3
RNA binding protein
transcription factor
Date released
88
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
16
July, 2019
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
231
bam
212
bigWig
194
bed narrowPeak
118
bigBed narrowPeak
104
tagAlign
41
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
26
tsv
8
fastq
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
265
Homo sapiens
Biosample type
248
tissue
17
primary cell
Organ
920
pancreas
642
connective tissue
509
epithelium
473
adipose tissue
451
liver
374
heart
340
kidney
265
brain
226
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
91
musculature of body
59
eye
43
nerve
34
embryo
22
vein
20
lung
18
blood
18
bodily fluid
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
265
AMP
Genome assembly (visualization)
207
GRCh38
153
hg19
Lab
265
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_title!
RRBS
month_released!
October, 2017
target.investigated_as!
chromatin remodeller
transcription factor
BIOSAMPLE
ASSAY
265 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
23
brain
5
14
1
1
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 77 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
See all biosamples
Download