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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
404
total RNA-seq
109
ChIP-seq
36
DNase-seq
9
WGBS
8
ATAC-seq
6
Hi-C
RRBS
5
small RNA-seq
4
pCHi-C
1
RNA microarray
1
single cell RNA-seq
1
snATAC-seq
Assay category
410
Transcription
109
DNA binding
45
DNA accessibility
9
DNA methylation
6
3D chromatin structure
Target of assay
71
histone
71
histone modification
44
broad histone mark
27
narrow histone mark
20
control
18
transcription factor
3
other context
3
other post-translational modification
Date released
386
February, 2021
79
August, 2017
44
June, 2019
October, 2018
21
July, 2019
10
November, 2018
7
December, 2018
7
January, 2019
7
March, 2020
7
May, 2019
4
February, 2020
2
January, 2018
2
May, 2022
2
October, 2017
1
August, 2018
1
August, 2021
1
February, 2023
1
May, 2023
1
November, 2019
1
October, 2019
Available data
504
bigWig
500
bam
411
tsv
82
bed narrowPeak
65
bigBed narrowPeak
50
bed broadPeak
45
fastq
41
bed bed3+
36
bigBed broadPeak
23
tagAlign
5
bed bedMethyl
5
bigBed bedMethyl
3
bedpe bed3+
2
hic
1
txt
Organism
583
Homo sapiens
Biosample type
568
tissue
15
primary cell
1
in vitro differentiated cells
Organ
891
pancreas
789
liver
660
connective tissue
516
epithelium
468
adipose tissue
391
heart
350
kidney
284
brain
235
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
584
AMP
Genome assembly (visualization)
505
hg19
488
GRCh38
Lab
584
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
1
audit script error
Audit category:
12
missing controlled_by
assay_title!
RRBS
month_released!
October, 2018
BIOSAMPLE
ASSAY
584 results
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total RNA-seq
ChIP-seq
DNase-seq
WGBS
ATAC-seq
Hi-C
small RNA-seq
pCHi-C
RNA microarray
single cell RNA-seq
snATAC-seq
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
1
22
1
1
1
1
spleen
20
1
2
1
1
muscle of leg
7
13
1
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primary cell
skeletal muscle satellite cell
1
8
1
skeletal muscle cell
2
1
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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