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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
13
ATAC-seq
10
total RNA-seq
6
Hi-C
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
47
DNA accessibility
39
DNA binding
13
Transcription
6
3D chromatin structure
1
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
22
August, 2017
9
July, 2019
8
February, 2021
8
February, 2023
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
68
bed narrowPeak
68
bigWig
65
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
5
txt
4
bed bed3
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
Organism
107
Homo sapiens
Biosample type
94
tissue
13
primary cell
Organ
944
pancreas
789
liver
683
connective tissue
518
epithelium
491
adipose tissue
391
heart
350
kidney
284
brain
235
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
intestine
2
pituitary gland
2
thymus
1
adrenal gland
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
107
AMP
Genome assembly (visualization)
82
hg19
61
GRCh38
Lab
107
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
RRBS
organ_slims!
bone marrow
intestine
BIOSAMPLE
ASSAY
107 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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