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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
501
ChIP-seq
257
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1227
Transcription
501
DNA binding
286
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
316
histone modification
315
histone
216
narrow histone mark
187
control
99
broad histone mark
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
239
August, 2017
229
August, 2021
195
October, 2019
193
May, 2020
120
July, 2018
95
February, 2023
75
July, 2019
66
May, 2022
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
35
May, 2024
29
October, 2018
25
February, 2020
25
November, 2017
22
May, 2019
19
April, 2020
17
October, 2017
15
April, 2019
15
May, 2023
12
December, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1818
bam
1679
bigWig
1076
tsv
909
bed narrowPeak
bigBed narrowPeak
298
fastq
238
tagAlign
213
bed broadPeak
192
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2184
Homo sapiens
Biosample type
2187
tissue
979
primary cell
330
in vitro differentiated cells
269
cell line
10
stem cell
Organ
525
connective tissue
466
adipose tissue
436
pancreas
308
liver
220
heart
211
kidney
158
bone element
149
brain
71
blood vessel
71
vasculature
53
eye
48
artery
44
musculature of body
38
limb
20
lung
17
nerve
16
skeleton
15
epithelium
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2090
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1276
GRCh38
1239
hg19
Lab
1840
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
9
audit script error
Audit category:
5
missing controlled_by
assay_title!
STARR-seq
assay_title!!
STARR-seq
files.file_type!
bigBed narrowPeak
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
2187 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
64
68
6
7
4
3
1
4
adipose tissue
382
1
2
3
1
liver
167
103
20
1
3
1
1
1
1
kidney
49
8
75
64
6
1
1
bone element
84
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