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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
154
ChIP-seq
109
ATAC-seq
24
snATAC-seq
pCHi-C
11
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
Assay category
154
DNA binding
133
DNA accessibility
11
Transcription
1
3D chromatin structure
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
159
May, 2021
79
August, 2021
18
February, 2023
18
May, 2022
16
January, 2021
14
May, 2023
Available data
196
bed narrowPeak
122
bigWig
102
bam
84
tagAlign
64
xls
18
fastq
8
txt
1
hic
Organism
304
Homo sapiens
Biosample type
132
tissue
125
primary cell
42
in vitro differentiated cells
5
cell line
Organ
93
kidney
39
pancreas
8
blood
8
bodily fluid
Project
186
AMP
118
T1D
Genome assembly (visualization)
159
GRCh38
141
hg19
Lab
2631
AMP-T2D consortium
232
Klaus Kaestner, Upenn
211
Kyle Gaulton, UCSD
93
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
23
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
assay_title!
STARR-seq
pCHi-C
total RNA-seq
BIOSAMPLE
ASSAY
304 results
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ChIP-seq
ATAC-seq
snATAC-seq
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
tissue
kidney
75
6
11
1
islet of Langerhans
29
6
pancreas
4
primary cell
monocyte
84
CD8-positive, alpha-beta T cell
33
peripheral blood mononuclear cell
8
in vitro differentiated cells
embryonic stem cell
37
5
cell line
EndoC_BH1
3
2
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