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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
ChIP-seq
134
total RNA-seq
42
ATAC-seq
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
176
DNA binding
136
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
97
histone
97
histone modification
49
broad histone mark
47
narrow histone mark
46
transcription factor
33
control
9
RNA binding protein
2
chromatin remodeller
Date released
127
May, 2021
68
August, 2017
42
August, 2021
39
February, 2018
26
February, 2021
24
December, 2017
16
February, 2023
8
October, 2019
5
November, 2019
4
January, 2018
4
March, 2020
2
December, 2019
Available data
267
bam
239
bigWig
127
tsv
121
fastq
114
bed narrowPeak
37
tagAlign
25
bed bed3+
7
bed bedgraph
5
bed bed3
4
bedpe bed3+
4
hic
3
bigBed narrowPeak
3
txt
1
bed broadPeak
1
bigBed broadPeak
Organism
365
Homo sapiens
Biosample type
2722
tissue
665
primary cell
572
cell line
365
in vitro differentiated cells
6
stem cell
Organ
96
connective tissue
29
embryo
epithelium
15
liver
3
pancreas
1
heart
Project
365
AMP
Genome assembly (visualization)
275
hg19
245
GRCh38
4
hg18
Lab
311
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
107
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
16
inconsistent control read length
assay_title!
STARR-seq
pCHi-C
month_released!
May, 2023
organ_slims!
epithelium
BIOSAMPLE
ASSAY
365 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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