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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
17
total RNA-seq
5
ATAC-seq
4
small RNA-seq
3
Hi-C
single cell RNA-seq
2
DNase-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
21
Transcription
8
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
87
October, 2019
June, 2019
28
May, 2019
16
October, 2017
15
July, 2019
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
210
bam
189
bigWig
173
bed narrowPeak
118
tagAlign
97
bigBed narrowPeak
23
tsv
21
fastq
17
bed broadPeak
8
bigBed broadPeak
5
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
254
Homo sapiens
Biosample type
241
tissue
13
primary cell
Organ
862
pancreas
786
liver
662
connective tissue
490
adipose tissue
434
epithelium
265
heart
253
brain
223
vasculature
219
blood vessel
207
kidney
159
bone element
137
artery
90
limb
69
blood
69
bodily fluid
54
eye
52
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
16
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
254
AMP
Genome assembly (visualization)
184
GRCh38
141
hg19
Lab
254
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
STARR-seq
single cell RNA-seq
month_released!
June, 2019
BIOSAMPLE
ASSAY
254 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
DNase-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
1
1
2
1
layer of hippocampus
23
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
+ See 72 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
brain pericyte
1
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