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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
16
snATAC-seq
1
Hi-C
Assay category
154
DNA binding
16
DNA accessibility
1
3D chromatin structure
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
33
transcription factor
27
control
7
RNA binding protein
2
chromatin remodeller
Date released
406
November, 2017
322
August, 2017
280
October, 2019
240
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
April, 2018
48
July, 2018
48
March, 2020
47
September, 2018
47
September, 2023
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
154
bam
127
bed narrowPeak
127
bigBed narrowPeak
127
bigWig
35
fastq
Organism
171
Homo sapiens
Biosample type
130
tissue
28
cell line
13
primary cell
Organ
50
blood vessel
50
vasculature
35
blood
35
bodily fluid
28
brain
21
heart
10
pancreas
7
limb
7
musculature of body
7
spleen
5
artery
5
epithelium
5
kidney
1
liver
Project
155
AMP
16
T1D
Genome assembly (visualization)
127
hg19
126
GRCh38
Lab
155
AMP-T2D consortium
16
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
1
inconsistent control
assay_title!
STARR-seq
total RNA-seq
organ_slims!
ovary
BIOSAMPLE
ASSAY
171 results
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Clear Filters
ChIP-seq
snATAC-seq
Hi-C
tissue
ascending aorta
16
thoracic aorta
16
temporal lobe
15
angular gyrus
13
aorta
13
+ See 9 more…
cell line
GM12878
27
HepG2
1
primary cell
peripheral blood mononuclear cell
8
kidney epithelial cell
5
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