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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
25
ATAC-seq
9
pCHi-C
9
total RNA-seq
5
GRO-seq
4
Hi-C
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
Assay category
78
DNA binding
25
DNA accessibility
11
Transcription
4
3D chromatin structure
Target of assay
34
histone
34
histone modification
32
control
19
broad histone mark
15
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
48
May, 2021
19
August, 2017
16
February, 2023
12
August, 2021
10
March, 2020
8
February, 2018
5
December, 2017
5
January, 2018
4
February, 2021
4
October, 2019
2
March, 2023
1
August, 2018
Available data
26
bam
24
fastq
22
tagAlign
17
bigWig
7
bed bedgraph
7
bedpe bed3+
6
bed bed3+
6
tsv
5
bed bed3
4
bed narrowPeak
4
hic
3
txt
2
bigBed narrowPeak
2
ibed
Organism
132
Homo sapiens
Biosample type
909
tissue
521
primary cell
193
cell line
127
in vitro differentiated cells
7
stem cell
Organ
44
connective tissue
8
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
132
AMP
2
community
Genome assembly (visualization)
300
hg19
GRCh38
5
hg18
Lab
78
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
2
Anna Gloyn, Oxford
Audit category:
17
inconsistent ontology term
audit script error
Audit category:
1
missing controlled_by
assay_title!
STARR-seq
assembly!
GRCh38
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
134 results
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ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
GRO-seq
Hi-C
Capture-C
CRISPR RNA-seq
CRISPRi RNA-seq
in vitro differentiated cells
embryonic stem cell
38
6
1
5
adipocyte
19
8
1
1
neural progenitor cell
8
pancreatic endoderm
5
1
chondrocyte
5
+ See 17 more…
stem cell
SB Ad3.1
1
1
hESC
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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