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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
19
RRBS
Assay category
60
DNA accessibility
60
DNA methylation
52
Transcription
Date released
134
May, 2022
19
September, 2020
15
July, 2019
4
August, 2017
Available data
433
bam
407
fastq
239
bigWig
200
tsv
185
bed narrowPeak
161
txt
153
zippedFastqFolder
152
tagAlign
44
bigBed narrowPeak
40
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
172
Homo sapiens
Biosample type
163
primary cell
9
tissue
Organ
86
epithelium
82
pancreas
4
kidney
3
musculature of body
2
brain
2
heart
2
liver
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
153
HPAP
19
AMP
Genome assembly (visualization)
19
hg19
GRCh38
Lab
153
Klaus Kaestner, Upenn
19
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
STARR-seq
assembly!
GRCh38
BIOSAMPLE
ASSAY
172 results
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single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
RRBS
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
cardiac fibroblast
1
+ See 9 more…
tissue
skeletal muscle tissue
2
brain
1
heart left ventricle
1
islet of Langerhans
1
kidney
1
+ See 3 more…
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