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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
18
total RNA-seq
6
ATAC-seq
3
Hi-C
2
RRBS
2
pCHi-C
2
single cell RNA-seq
1
FAIRE-seq
Assay category
56
DNA binding
20
Transcription
7
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
37
control
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
Date released
28
November, 2017
14
February, 2020
13
October, 2019
9
February, 2023
9
October, 2017
6
July, 2019
5
May, 2019
2
August, 2021
2
February, 2021
2
March, 2020
Available data
38
tagAlign
37
bam
18
tsv
8
bigWig
6
fastq
5
bed bed3
4
txt
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bed narrowPeak
2
bigBed bedMethyl
1
bed broadPeak
1
bigBed narrowPeak
Organism
90
Homo sapiens
Biosample type
81
tissue
7
primary cell
2
cell line
Organ
311
pancreas
258
liver
230
epithelium
147
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
90
AMP
Genome assembly (visualization)
GRCh38
269
hg19
Lab
90
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_title!
STARR-seq
assembly!
GRCh38
BIOSAMPLE
ASSAY
90 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
FAIRE-seq
tissue
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
tibial artery
5
1
substantia nigra
4
1
+ See 27 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
brain pericyte
1
cell line
smooth muscle cell of the coronary artery
2
See all biosamples
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