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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
6
Hi-C
5
RRBS
2
total RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
6
3D chromatin structure
6
DNA binding
5
DNA methylation
3
Transcription
2
DNA accessibility
Target of assay
20
histone
histone modification
12
broad histone mark
8
narrow histone mark
6
control
Date released
7
August, 2017
5
July, 2019
3
March, 2020
2
February, 2020
2
June, 2019
2
May, 2022
1
January, 2018
1
May, 2019
Available data
3
bam
3
bed bedMethyl
3
bigBed bedMethyl
3
tsv
2
bedpe bed3+
2
fastq
2
hic
2
tagAlign
1
bed bed3+
1
bigWig
1
txt
Organism
23
Homo sapiens
Biosample type
20
tissue
3
primary cell
Organ
296
pancreas
225
epithelium
225
liver
147
kidney
126
heart
93
bone element
74
connective tissue
53
eye
50
brain
40
vasculature
38
blood vessel
36
adipose tissue
24
limb
23
musculature of body
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
spleen
8
skeleton
7
embryo
5
vein
2
intestine
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
23
AMP
Genome assembly (visualization)
46
hg19
GRCh38
Lab
23
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
STARR-seq
assembly!
GRCh38
organ_slims!
thymus
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
23 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
3
4
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
1
left ventricle myocardium
1
muscle of leg
1
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
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