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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
896
total RNA-seq
498
ChIP-seq
177
DNase-seq
156
ATAC-seq
16
WGBS
16
small RNA-seq
6
single cell RNA-seq
Assay category
918
Transcription
498
DNA binding
333
DNA accessibility
16
DNA methylation
Target of assay
406
histone modification
405
histone
219
narrow histone mark
186
broad histone mark
89
transcription factor
23
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
163
June, 2019
162
May, 2020
161
October, 2019
158
August, 2017
116
July, 2018
May, 2019
64
April, 2019
64
August, 2021
61
July, 2019
57
November, 2017
45
October, 2018
40
May, 2024
39
November, 2019
38
May, 2021
36
December, 2017
35
February, 2023
22
November, 2018
14
October, 2017
12
May, 2023
9
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
March, 2019
2
September, 2017
Available data
1620
bigWig
1611
bam
917
tsv
791
bed narrowPeak
463
bigBed narrowPeak
280
fastq
204
bed bed3+
191
bed broadPeak
176
bigBed broadPeak
116
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
1
tagAlign bed3+
Organism
1759
Homo sapiens
Biosample type
1765
tissue
532
primary cell
464
cell line
265
in vitro differentiated cells
3
stem cell
Organ
480
connective tissue
422
adipose tissue
383
pancreas
238
liver
178
brain
176
heart
165
kidney
91
limb
66
blood vessel
66
bone element
66
vasculature
59
artery
37
musculature of body
31
nerve
18
ureter
16
spleen
8
skeleton
3
eye
1
pituitary gland
Project
1763
AMP
2
T1D
Genome assembly (visualization)
1765
GRCh38
1659
hg19
Lab
1649
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
STARR-seq
month_released!
March, 2019
May, 2019
BIOSAMPLE
ASSAY
1765 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
tissue
adipose tissue
382
1
2
islet of Langerhans
260
25
1
20
6
liver
147
75
2
1
kidney
20
13
75
bone tissue
58
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