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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
160
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
160
DNA binding
10
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
103
transcription factor
30
histone
30
histone modification
27
control
25
RNA binding protein
15
broad histone mark
15
narrow histone mark
15
recombinant protein
8
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
399
May, 2021
396
November, 2017
372
August, 2017
341
May, 2020
314
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
93
December, 2017
85
November, 2018
80
April, 2019
76
October, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
41
September, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
178
fastq
177
bam
150
bigWig
143
bed narrowPeak
121
bigBed narrowPeak
24
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
178
Homo sapiens
Biosample type
74
tissue
58
cell line
42
in vitro differentiated cells
3
stem cell
1
primary cell
Organ
113
liver
19
epithelium
15
blood
15
bodily fluid
12
embryo
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
178
AMP
Genome assembly (visualization)
154
GRCh38
146
hg19
Lab
178
AMP-T2D consortium
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
14
inconsistent control read length
2
inconsistent control run_type
assay_title!
STARR-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
178 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
tissue
liver
42
2
right lobe of liver
10
1
spleen
6
1
2
body of pancreas
2
2
pancreas
2
1
+ See 2 more…
cell line
HepG2
42
1
GM12878
15
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
8
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 1 more…
stem cell
hESC
3
primary cell
pancreatic cell
1
See all biosamples
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