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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ATAC-seq
58
total RNA-seq
47
WGBS
10
snATAC-seq
3
Hi-C
Assay category
70
DNA accessibility
58
Transcription
47
DNA methylation
3
3D chromatin structure
Date released
80
May, 2022
55
February, 2023
19
September, 2020
8
January, 2021
7
August, 2020
6
February, 2021
3
October, 2022
Available data
80
zippedFastqFolder
69
fastq
10
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
178
Homo sapiens
Biosample type
152
primary cell
26
tissue
Organ
178
pancreas
152
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
152
HPAP
AMP
26
T1D
Genome assembly (visualization)
10
GRCh38
3
hg19
Lab
152
Klaus Kaestner, Upenn
26
Kyle Gaulton, UCSD
AMP-T2D consortium
Audit category:
3
audit script error
assay_title!
STARR-seq
award.project!
AMP
files.file_type!
xls
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
178 results
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ATAC-seq
total RNA-seq
WGBS
snATAC-seq
Hi-C
primary cell
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
11
5
6
pancreas
4
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