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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
51
DNA binding
8
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
narrow histone mark
Date released
52
October, 2019
6
February, 2021
5
July, 2019
5
May, 2019
3
February, 2020
Available data
100
bam
78
bed narrowPeak
77
bigWig
70
bigBed narrowPeak
36
bed bed3+
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
71
Homo sapiens
Biosample type
71
tissue
Organ
826
pancreas
672
liver
641
connective tissue
477
adipose tissue
453
epithelium
323
heart
259
kidney
195
vasculature
193
blood vessel
158
bone element
131
artery
130
brain
71
limb
60
blood
60
bodily fluid
54
eye
42
musculature of body
33
nerve
29
embryo
22
spleen
20
lung
16
skeleton
12
vein
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
71
AMP
Genome assembly (visualization)
47
GRCh38
46
hg19
Lab
71
AMP-T2D consortium
assay_title!
STARR-seq
award.project!
T1D
files.file_type!
bed broadPeak
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
71 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
27
1
5
tibial artery
19
1
1
muscle of leg
5
1
gastrocnemius medialis
1
4
distal epiphysis of femur
1
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