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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
ATAC-seq
50
total RNA-seq
9
ChIP-seq
6
snATAC-seq
2
Capture-C
2
Hi-C
1
RNA microarray
Assay category
156
Transcription
80
DNA accessibility
9
DNA binding
2
3D chromatin structure
Target of assay
8
control
1
broad histone mark
1
histone
1
histone modification
Date released
250
August, 2021
196
February, 2023
180
May, 2022
151
February, 2021
139
August, 2017
97
October, 2019
80
May, 2020
80
May, 2021
56
September, 2020
47
September, 2023
40
March, 2020
29
October, 2018
26
November, 2019
25
February, 2020
25
November, 2017
23
July, 2019
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
9
October, 2017
8
February, 2018
8
June, 2019
6
September, 2017
5
December, 2019
5
March, 2019
5
November, 2020
4
December, 2018
4
July, 2018
4
November, 2018
3
March, 2023
3
October, 2022
1
August, 2018
1
August, 2022
1
January, 2019
1
September, 2018
Available data
106
tsv
92
bed narrowPeak
64
xls
57
txt
41
bam
bigWig
24
tagAlign
5
bed bed3+
1
bedpe bed3+
1
hic
Organism
249
Homo sapiens
Biosample type
229
tissue
20
in vitro differentiated cells
cell line
1
primary cell
Organ
128
kidney
92
heart
6
blood vessel
6
vasculature
3
connective tissue
2
artery
2
pancreas
1
adipose tissue
1
epithelium
1
liver
Project
250
AMP
Genome assembly (visualization)
74
GRCh38
13
hg19
Lab
128
Katalin Susztak, Upenn
118
AMP-T2D consortium
2
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
assay_title!
STARR-seq
biosample_type!
cell line
files.file_type!
bigWig
BIOSAMPLE
ASSAY
250 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
in vitro differentiated cells
neural progenitor cell
10
8
adipocyte
1
osteoblast
1
primary cell
hepatocyte
1
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