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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
10
ATAC-seq
9
total RNA-seq
STARR-seq
4
Capture-C
1
Hi-C
1
whole genome sequencing assay
Assay category
13
DNA binding
10
DNA accessibility
9
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
1
broad histone mark
1
histone
1
histone modification
Date released
134
May, 2022
107
February, 2023
94
May, 2021
63
February, 2021
58
May, 2020
56
September, 2020
47
November, 2017
38
August, 2021
33
August, 2017
25
October, 2019
15
March, 2020
10
December, 2017
9
July, 2019
9
November, 2019
8
February, 2018
8
January, 2021
8
June, 2019
7
November, 2020
5
March, 2023
5
November, 2018
4
October, 2022
3
January, 2019
2
December, 2019
1
August, 2018
1
December, 2018
1
May, 2019
1
September, 2018
Available data
49
bam
bigWig
42
bed narrowPeak
24
tagAlign
24
tsv
5
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
38
Homo sapiens
Biosample type
tissue
20
in vitro differentiated cells
17
cell line
1
primary cell
Organ
16
liver
3
epithelium
2
connective tissue
2
pancreas
Project
38
AMP
Genome assembly (visualization)
13
hg19
10
GRCh38
Lab
21
AMP-T2D consortium
15
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
assay_title!
STARR-seq
biosample_type!
tissue
files.file_type!
bigWig
BIOSAMPLE
ASSAY
38 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Capture-C
Hi-C
whole genome sequencing assay
in vitro differentiated cells
neural progenitor cell
8
10
adipocyte
1
osteoblast
1
cell line
HepG2
4
9
1
1
EndoC_BH1
2
primary cell
hepatocyte
1
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