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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
929
total RNA-seq
658
ChIP-seq
230
ATAC-seq
173
single cell RNA-seq
136
DNase-seq
87
RNA microarray
27
snATAC-seq
23
pCHi-C
16
WGBS
15
small RNA-seq
10
Hi-C
6
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
1117
Transcription
658
DNA binding
395
DNA accessibility
22
DNA methylation
10
3D chromatin structure
Target of assay
529
histone
529
histone modification
287
narrow histone mark
242
broad histone mark
116
control
15
transcription factor
13
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
242
October, 2019
229
August, 2021
193
May, 2020
131
June, 2019
118
July, 2018
108
May, 2019
95
February, 2023
85
August, 2017
82
November, 2017
80
April, 2019
70
July, 2019
47
September, 2023
40
May, 2021
40
May, 2022
40
May, 2024
40
November, 2019
34
March, 2020
23
February, 2020
19
April, 2020
16
October, 2018
15
May, 2023
8
January, 2021
6
October, 2017
4
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1863
bam
1715
bigWig
1068
tsv
933
bed narrowPeak
523
bigBed narrowPeak
fastq
223
tagAlign
172
bed bed3+
168
bed broadPeak
156
txt
144
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2317
Homo sapiens
Biosample type
2319
tissue
665
primary cell
253
in vitro differentiated cells
230
cell line
6
stem cell
Organ
504
connective tissue
445
adipose tissue
313
heart
299
kidney
292
pancreas
278
liver
253
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
musculature of body
73
artery
56
eye
43
nerve
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
2222
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1537
GRCh38
1402
hg19
Lab
1993
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
90
inconsistent ontology term
8
audit script error
assay_title!
STARR-seq
files.file_type!
fastq
organ_slims!
large intestine
musculature of body
BIOSAMPLE
ASSAY
2319 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
195
43
48
7
4
3
1
4
liver
167
78
20
1
1
2
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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