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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
810
total RNA-seq
752
ChIP-seq
175
ATAC-seq
174
DNase-seq
86
RNA microarray
73
single cell RNA-seq
24
pCHi-C
23
WGBS
22
snATAC-seq
13
Hi-C
13
small RNA-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
896
Transcription
752
DNA binding
375
DNA accessibility
33
DNA methylation
13
3D chromatin structure
Target of assay
558
histone
558
histone modification
280
narrow histone mark
278
broad histone mark
141
control
55
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
544
February, 2021
236
October, 2019
230
August, 2017
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
69
July, 2019
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
37
March, 2020
26
May, 2022
23
February, 2020
23
October, 2017
19
April, 2020
19
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1619
bam
1507
bigWig
822
tsv
807
bed narrowPeak
512
bigBed narrowPeak
294
fastq
210
bed broadPeak
199
bed bed3+
173
bigBed broadPeak
168
tagAlign
100
txt
24
bed bedMethyl
24
bigBed bedMethyl
9
hic
8
bedpe bed3+
5
bed bed3
5
csv
1
bedpe
1
tagAlign bed3+
Organism
2178
Homo sapiens
Biosample type
2186
tissue
1074
primary cell
337
in vitro differentiated cells
248
cell line
10
stem cell
Organ
546
connective tissue
503
pancreas
487
adipose tissue
liver
265
brain
221
heart
171
kidney
158
bone element
127
blood vessel
127
vasculature
122
limb
82
musculature of body
71
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
spinal cord
1
stomach
1
urinary bladder
Project
2089
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1557
GRCh38
1486
hg19
Lab
2004
AMP-T2D consortium
52
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
14
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
assay_title!
STARR-seq
month_released!
August, 2021
organ_slims!
liver
spinal cord
BIOSAMPLE
ASSAY
2186 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
pCHi-C
WGBS
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
291
71
68
1
6
4
7
2
1
1
4
adipose tissue
382
2
3
1
3
kidney
27
11
13
56
1
1
bone element
84
bone tissue
58
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