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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
66
ATAC-seq
59
total RNA-seq
19
ChIP-seq
6
snATAC-seq
STARR-seq
4
Capture-C
3
Hi-C
1
whole genome sequencing assay
Assay category
165
Transcription
72
DNA accessibility
19
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
264
August, 2021
204
February, 2023
176
May, 2022
143
February, 2021
129
August, 2017
122
May, 2021
64
October, 2019
59
September, 2020
58
May, 2020
48
March, 2020
47
September, 2023
40
May, 2024
26
July, 2019
25
February, 2020
18
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
4
July, 2018
4
March, 2019
3
October, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
March, 2023
1
November, 2018
1
September, 2018
0
April, 2018
Available data
172
tsv
106
bed narrowPeak
bam
96
bigWig
64
xls
57
txt
44
fastq
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
264
Homo sapiens
Biosample type
228
tissue
31
cell line
5
in vitro differentiated cells
Organ
128
kidney
92
heart
29
liver
6
blood vessel
6
vasculature
4
connective tissue
4
pancreas
2
artery
2
epithelium
Project
264
AMP
Genome assembly (visualization)
64
GRCh38
20
hg19
Lab
128
Katalin Susztak, Upenn
101
AMP-T2D consortium
31
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
assay_title!
STARR-seq
files.file_type!
bam
BIOSAMPLE
ASSAY
264 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
Capture-C
Hi-C
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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cell line
HepG2
9
18
1
1
EndoC_BH1
2
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
neural progenitor cell
1
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