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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
78
total RNA-seq
77
ATAC-seq
43
ChIP-seq
10
MeRIP-seq
6
snATAC-seq
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
184
Transcription
83
DNA accessibility
43
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
17
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
5
nucleotide modification
1
RNA binding protein
Date released
715
February, 2021
399
May, 2021
370
August, 2017
341
May, 2020
336
November, 2017
314
August, 2021
305
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
May, 2023
15
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2023
4
August, 2018
4
March, 2019
4
October, 2022
3
June, 2018
1
August, 2022
Available data
127
tsv
108
bed narrowPeak
64
xls
57
txt
55
bam
52
bigWig
24
tagAlign
6
bed bed3+
2
bedpe bed3+
2
hic
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
1
vcf
Organism
328
Homo sapiens
Biosample type
233
tissue
45
cell line
42
in vitro differentiated cells
9
primary cell
Organ
128
kidney
92
heart
33
liver
14
pancreas
12
epithelium
10
connective tissue
8
embryo
6
blood vessel
6
vasculature
2
artery
1
adipose tissue
Project
329
AMP
Genome assembly (visualization)
110
GRCh38
65
hg19
Lab
156
AMP-T2D consortium
128
Katalin Susztak, Upenn
31
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Struan F.A. Grant, CHOP
Audit category:
8
inconsistent ontology term
assay_title!
STARR-seq
files.file_type!
bed broadPeak
month_released!
May, 2023
BIOSAMPLE
ASSAY
329 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
snATAC-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
64
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
18
1
1
EndoC_BH1
6
2
H1-hESC
8
in vitro differentiated cells
neural progenitor cell
7
10
21
adipocyte
1
1
osteoblast
1
1
primary cell
osteoblast
4
1
hepatocyte
4
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