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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
total RNA-seq
6
ChIP-seq
2
ATAC-seq
Assay category
15
Transcription
6
DNA binding
2
DNA accessibility
Target of assay
control
6
histone
6
histone modification
5
broad histone mark
1
narrow histone mark
Date released
689
February, 2021
291
May, 2020
257
May, 2021
219
August, 2017
196
August, 2021
168
July, 2018
162
May, 2022
140
February, 2023
98
July, 2019
86
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
27
September, 2018
25
February, 2020
22
November, 2017
22
November, 2019
19
April, 2020
16
January, 2021
15
February, 2018
15
May, 2023
10
December, 2019
9
November, 2018
9
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
April, 2019
1
August, 2022
1
December, 2017
1
December, 2018
Available data
46
fastq
45
bigWig
44
bam
bed narrowPeak
15
tsv
12
tagAlign
6
bigBed narrowPeak
4
bed broadPeak
Organism
23
Homo sapiens
Biosample type
15
in vitro differentiated cells
8
tissue
Organ
7
brain
4
embryo
1
pancreas
Project
23
AMP
Genome assembly (visualization)
17
GRCh38
16
hg19
Lab
22
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
1
missing controlled_by
assay_title!
STARR-seq
files.file_type!
bed narrowPeak
target.investigated_as!
control
BIOSAMPLE
ASSAY
23 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
in vitro differentiated cells
pancreatic endoderm
4
definitive endodermal cell
2
embryonic stem cell
2
endocrine cell
2
posterior foregut
2
+ See 2 more…
tissue
brain
6
cerebellum (Hemisphere)
1
islet of Langerhans
1
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