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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
single cell RNA-seq
74
ATAC-seq
59
total RNA-seq
13
ChIP-seq
6
snATAC-seq
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
159
Transcription
80
DNA accessibility
13
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
1
broad histone mark
1
histone
1
histone modification
Date released
261
August, 2021
180
May, 2022
167
February, 2023
154
February, 2021
139
August, 2017
96
May, 2021
96
October, 2019
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
41
March, 2020
30
November, 2019
29
October, 2018
22
December, 2017
22
February, 2020
22
July, 2019
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
12
May, 2019
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
117
tsv
106
bed narrowPeak
64
xls
57
txt
49
bam
bigWig
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
260
Homo sapiens
Biosample type
223
tissue
20
in vitro differentiated cells
17
cell line
1
primary cell
Organ
128
kidney
92
heart
16
liver
blood vessel
6
vasculature
4
pancreas
3
connective tissue
3
epithelium
2
artery
1
adipose tissue
Project
261
AMP
Genome assembly (visualization)
74
GRCh38
14
hg19
Lab
128
Katalin Susztak, Upenn
114
AMP-T2D consortium
17
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
assay_title!
STARR-seq
files.file_type!
bigWig
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
261 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 9 more…
in vitro differentiated cells
neural progenitor cell
10
8
adipocyte
1
osteoblast
1
cell line
HepG2
9
4
1
1
EndoC_BH1
2
primary cell
hepatocyte
1
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