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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
12
ATAC-seq
2
ChIP-seq
Assay category
207
DNA accessibility
2
DNA binding
Target of assay
2
broad histone mark
2
histone
2
histone modification
Date released
187
June, 2019
10
February, 2023
9
October, 2019
2
February, 2021
1
November, 2020
Available data
3392
bam
3169
bigWig
1817
bed narrowPeak
1600
tsv
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
209
Homo sapiens
Biosample type
172
tissue
30
primary cell
5
in vitro differentiated cells
2
cell line
Organ
78
kidney
36
limb
33
musculature of body
31
brain
30
heart
18
epithelium
18
ureter
13
connective tissue
13
vasculature
11
blood vessel
5
pancreas
4
artery
4
bone element
4
eye
4
skeleton
4
vein
3
liver
2
nerve
1
adipose tissue
Project
209
AMP
Genome assembly (visualization)
197
GRCh38
186
hg19
Lab
209
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
inconsistent replicate
assay_title!
STARR-seq
files.file_type!
fastq
BIOSAMPLE
ASSAY
209 results
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Clear Filters
DNase-seq
ATAC-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
12
1
kidney
13
muscle of leg
13
+ See 40 more…
primary cell
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
osteoblast
1
1
+ See 17 more…
in vitro differentiated cells
chondrocyte
5
cell line
HepG2
1
Panc1
1
See all biosamples
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