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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
total RNA-seq
48
snATAC-seq
47
WGBS
46
ATAC-seq
45
single cell RNA-seq
3
Hi-C
Assay category
121
Transcription
94
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
76
February, 2023
September, 2020
45
February, 2021
7
August, 2020
3
October, 2022
Available data
134
zippedFastqFolder
128
fastq
7
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
265
Homo sapiens
Biosample type
265
primary cell
Organ
133
epithelium
133
pancreas
Project
265
HPAP
Genome assembly (visualization)
7
GRCh38
3
hg19
Lab
3817
AMP-T2D consortium
342
Kyle Gaulton, UCSD
265
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
33
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
assay_title!
STARR-seq
month_released!
December, 2017
September, 2020
organ_slims!
thymus
BIOSAMPLE
ASSAY
265 results
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total RNA-seq
snATAC-seq
WGBS
ATAC-seq
single cell RNA-seq
Hi-C
primary cell
Langerhans cell
48
45
pancreatic alpha cell
27
31
27
1
pancreatic beta cell
10
16
15
1
exocrine cell
39
pancreatic acinar cell
4
1
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