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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
DNase-seq
76
ChIP-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
197
DNA accessibility
76
DNA binding
7
DNA methylation
1
Transcription
Target of assay
68
transcription factor
RNA binding protein
19
histone
19
histone modification
16
recombinant protein
14
control
11
narrow histone mark
8
broad histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
403
August, 2017
394
May, 2021
369
November, 2017
341
May, 2020
314
October, 2019
313
August, 2021
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
115
May, 2019
108
July, 2019
90
December, 2017
76
April, 2019
73
September, 2018
67
November, 2018
65
October, 2018
64
March, 2020
60
November, 2019
59
September, 2020
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
280
bam
265
bigWig
258
bed narrowPeak
258
bigBed narrowPeak
196
bed bed3+
196
bed broadPeak
196
bigBed broadPeak
67
fastq
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
281
Homo sapiens
Biosample type
189
tissue
52
primary cell
40
cell line
Organ
80
kidney
43
musculature of body
36
liver
34
heart
32
brain
32
limb
18
connective tissue
18
epithelium
18
ureter
13
blood
13
bodily fluid
11
pancreas
9
spleen
7
vasculature
6
eye
5
blood vessel
2
adipose tissue
2
artery
Project
281
AMP
Genome assembly (visualization)
264
GRCh38
233
hg19
Lab
281
AMP-T2D consortium
Audit category:
24
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
4
inconsistent control read length
3
inconsistent control run_type
assay_title!
STARR-seq
month_released!
April, 2018
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
281 results
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Clear Filters
DNase-seq
ChIP-seq
WGBS
FAIRE-seq
single cell RNA-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
primary cell
skeletal muscle satellite cell
8
cardiac fibroblast
3
4
mesenchymal stem cell
7
cardiac muscle cell
1
2
epithelial cell of proximal tubule
1
2
+ See 18 more…
cell line
HepG2
26
1
GM12878
13
See all biosamples
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