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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
40
single cell RNA-seq
27
ChIP-seq
16
total RNA-seq
3
ATAC-seq
Assay category
190
DNA accessibility
56
Transcription
27
DNA binding
Target of assay
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
8
control
RNA binding protein
4
transcription factor
Date released
715
February, 2021
403
August, 2017
394
May, 2021
369
November, 2017
341
May, 2020
314
October, 2019
313
August, 2021
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
115
May, 2019
108
July, 2019
90
December, 2017
76
April, 2019
73
September, 2018
67
November, 2018
65
October, 2018
64
March, 2020
60
November, 2019
59
September, 2020
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
214
bam
209
bigWig
206
bed narrowPeak
206
bigBed narrowPeak
187
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
41
fastq
19
zippedFastqFolder
Organism
273
Homo sapiens
Biosample type
163
tissue
110
primary cell
Organ
80
kidney
43
musculature of body
37
epithelium
34
heart
32
limb
30
brain
23
pancreas
18
ureter
17
connective tissue
7
vasculature
6
eye
5
blood vessel
2
artery
2
liver
1
adipose tissue
Project
214
AMP
59
HPAP
Genome assembly (visualization)
209
GRCh38
183
hg19
Lab
214
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
24
inconsistent ontology term
assay_title!
STARR-seq
month_released!
April, 2018
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
273 results
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Clear Filters
DNase-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 34 more…
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
skeletal muscle satellite cell
8
cardiac fibroblast
3
4
mesenchymal stem cell
7
+ See 20 more…
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