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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ChIP-seq
60
total RNA-seq
46
ATAC-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
72
DNA binding
66
Transcription
51
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
transcription factor
3
RNA binding protein
Date released
62
February, 2021
47
May, 2019
35
February, 2023
26
October, 2019
8
July, 2019
6
August, 2021
3
February, 2020
3
June, 2019
3
March, 2020
Available data
147
bam
120
bigWig
105
bed narrowPeak
67
tsv
59
bigBed narrowPeak
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
tagAlign
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
193
Homo sapiens
Biosample type
130
tissue
62
cell line
1
primary cell
Organ
927
pancreas
644
connective tissue
epithelium
474
adipose tissue
451
liver
376
heart
342
kidney
283
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
193
AMP
Genome assembly (visualization)
163
GRCh38
128
hg19
Lab
193
AMP-T2D consortium
assay_title!
STARR-seq
organ_slims!
epithelium
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
193 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
4
1
36
2
tibial artery
23
1
1
2
aorta
13
1
4
2
1
1
ascending aorta
15
2
1
thoracic aorta
15
2
1
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cell line
smooth muscle cell of the coronary artery
2
52
8
primary cell
smooth muscle cell of the coronary artery
1
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