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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 81DNase-seq
  • 75ATAC-seq
  • 64single cell RNA-seq
  • 60total RNA-seq
  • 52ChIP-seq
  • 6snATAC-seq
  • 4RRBS
  • 3snDrop-seq
  • 2RNA microarray
  • STARR-seq
  • 2pCHi-C
  • 1FAIRE-seq
  • 1Hi-C
  • 1small RNA-seq
Assay category
  • 163DNA accessibility
  • 125Transcription
  • 52DNA binding
  • 4DNA methylation
  • 13D chromatin structure
Target of assay
  • 30histone
  • 30histone modification
  • 15broad histone mark
  • 15narrow histone mark
  • 12control
  • 10transcription factor
  • 7recombinant protein
  • 3RNA binding protein
Date released
  • 128August, 2021
  • 81June, 2019
  • 47September, 2023
  • 30October, 2019
  • 23April, 2019
  • 14May, 2023
  • 11July, 2019
  • 8February, 2021
  • 5May, 2019
  • 3December, 2019
  • 2March, 2020
Available data
  • 183bed narrowPeak
  • 144bam
  • 131bigWig
  • 104bigBed narrowPeak
  • 78bed bed3+
  • 78bed broadPeak
  • 78bigBed broadPeak
  • 64xls
  • 62txt
  • 24tsv
  • 5csv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 1hic
Organism
  • 352Homo sapiens
Biosample type
  • 299tissue
  • 36primary cell
  • 17cell line
Organ
  • 946pancreas
  • 789liver
  • 684connective tissue
  • 524epithelium
  • 491adipose tissue
  • 393heart
  • 352kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 305AMP
  • 47KPMP
Genome assembly (visualization)
  • 205GRCh38
  • 129hg19
Lab
  • 163AMP-T2D consortium
  • 142Katalin Susztak, Upenn
  • 47KPMP
Audit category:
  • 23inconsistent ontology term
  • 7audit script error
assay_title!
  • STARR-seq
BIOSAMPLE
ASSAY

352 results

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Clear Filters
DNase-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
pCHi-C
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney13756449276111
renal cortex interstitium11
renal pelvis10
right kidney10
left kidney9
primary cell
epithelial cell of proximal tubule11101
kidney epithelial cell1151
kidney tubule cell31
kidney glomerular epithelial cell21
renal cortical epithelial cell111
cell line
RCC 7860 HIF1a re-expression14
RCC 7860 vector131
RCC 7860 HIF2a over-expression13
glomerular visceral epithelial cell11
RCC 7860 VHL1
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