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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
21
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
21
DNA binding
9
Transcription
6
3D chromatin structure
5
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
narrow histone mark
5
control
Date released
39
June, 2019
19
August, 2017
9
July, 2019
5
March, 2020
May, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
52
bigWig
45
bam
45
bed narrowPeak
41
bed broadPeak
37
bigBed narrowPeak
34
bed bed3+
33
bigBed broadPeak
10
tagAlign
9
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
77
Homo sapiens
Biosample type
67
tissue
10
primary cell
Organ
821
pancreas
726
liver
645
connective tissue
473
adipose tissue
424
epithelium
335
kidney
330
heart
172
vasculature
167
blood vessel
159
bone element
151
brain
132
artery
101
limb
77
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
21
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
77
AMP
Genome assembly (visualization)
58
hg19
43
GRCh38
Lab
77
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
audit script error
assay_title!
WGBS
month_released!
May, 2019
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
77 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
15
1
4
1
1
1
1
muscle of arm
17
muscle of leg
13
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
5
1
1
skeletal muscle cell
1
1
1
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