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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1024
total RNA-seq
903
ChIP-seq
249
ATAC-seq
178
DNase-seq
124
single cell RNA-seq
87
RNA microarray
WGBS
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
8
snATAC-seq
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1164
Transcription
903
DNA binding
439
DNA accessibility
16
3D chromatin structure
11
DNA methylation
Target of assay
626
histone modification
625
histone
322
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
275
August, 2017
238
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
74
October, 2018
66
May, 2022
65
July, 2019
46
December, 2017
40
May, 2024
40
November, 2019
39
May, 2021
25
February, 2020
23
October, 2017
20
November, 2018
16
March, 2020
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1886
bam
1752
bigWig
1056
tsv
980
bed narrowPeak
559
bigBed narrowPeak
365
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2619
Homo sapiens
Biosample type
2627
tissue
614
cell line
557
primary cell
386
in vitro differentiated cells
4
stem cell
Organ
540
connective tissue
481
adipose tissue
470
pancreas
354
liver
302
heart
263
brain
252
kidney
158
bone element
130
blood vessel
130
vasculature
121
limb
80
musculature of body
73
artery
52
eye
43
nerve
22
spleen
18
ureter
16
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
Project
2627
AMP
47
KPMP
30
T1D
19
LungMap
Genome assembly (visualization)
1839
GRCh38
1751
hg19
Lab
2368
AMP-T2D consortium
142
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
25
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
25
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
WGBS
pCHi-C
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
2627 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
Hi-C
small RNA-seq
RRBS
snATAC-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
285
69
57
1
6
3
1
1
1
4
adipose tissue
382
2
3
liver
167
143
20
2
1
1
1
1
kidney
49
27
75
13
17
1
1
6
1
bone element
84
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